Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015821120.1_cds_XP_016500652.1_14448
CDS Infomation

[gene=LOC107819084] [db_xref=GeneID:107819084] [protein=putative E3 ubiquitin-protein ligase RING1a] [protein_id=XP_016500652.1] [location=complement(join(24229..24727,24844..24918,25004..25053,25169..25410,25485..25570,26074..26333))] [gbkey=CDS]
Sequence

ATGGTGAACGAAGATTCAATCAAGAGTCCCCTCAACACTAAAAGCGACCCTACGAAACAA
CCTGAAGAACCCAAAAATGGAGAAAGAGTTGATTCTATGTTTAGCCCAAATTTTAGATCA
GTGGCTGCTATGGCTGGTTGGGACGAAGAAGCTCTTCTCATTGCCAGTCTTGTCGTTGAA
GACACTCCCGATCGCCTTCCTAAACAAAAGAAACGTTCCGATTTGCTGCATTTCAAGACT
CCCCCAACAAATTCCAGAAGGAAAAGAAGGGTTCAGAAGAGGAGCCCTGAGTCCATACCT
GTGACTGTTCTTGATCTGGATGAAGAGGATGACACTGCAAAACAAGAAAGCGAGAAAAAG
GAGGCAGAATCAAAATCCATTGAGAATTTAGATAAGAAACGAGCTGAGGCATCAGAAGAA
CCAAGATGTTCTGCTTCATCTTCTGATAAGAATATAGAATCAAAATCTATTCAGAAAGCA
GAGAAGAAAGGAGGTGCAGGATTGGAAGAACAGGGATGTTCTGTTTCAGCCTCTTCTTCA
TCGGCATTTCCATGCATTGATCGACTTCGTGAAGAGCTTTCTTGCGCTATTTGTTTGGAG
ATATGTTTTGAACCTAGTACCACTCCTTGTGGTCACAGTTTTTGCAAGAAGTGTCTGAGA
TCTGCTGCTGATAAATGTGGAAAGAAATGTCCCAAGTGCAGGCAGCTTATAAGCAATGGA
AGATCTTGCACTGTAAACACAGTACTTTGGAATACAATTCAGCTTCTTTTTCCTAAAGAA
ATAGAAGCAAGAAAAGCTGCTGGAGCTTTGAACAGTAGAGAAGCTCGACGCAAAAGTCCA
GTAAGATCTGCTACAGCTAATTCTAACATCTCTAGCAGCAGAATATCACGAGTGTTCGCG
CTTAACAGTCCAGAATCTGGTCCTAGTAGTCAAGAAAGAAGGAATTCTCGCTCCATGAGA
AGACAAAGTGTCCGAGCTTCTGTAATACCAAACAGAAATCAAGAGATTAACTCGAGGAGG
GAGTTACCAAGCCAAGACGAGGATGCTGCACTGGCATTGAGAATGCAGAGAGAGGAGTTC
ATGGAATCCTTTAGGACAAGGAGTTCTGCTGATGAGCAGTACAGGAGCTCGCTCGCTTTA
GCCAGAGCAAATTTGAGGGCCATGGCATCAAGAGCCATTAACATTCGTGTTAGAGGAGGC
CGTGGAACATAA

Peptide Sequence

PEP ID

XP_016500652.1
PEP Infomation

PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Nicotiana tabacum]
Sequence

MVNEDSIKSPLNTKSDPTKQPEEPKNGERVDSMFSPNFRSVAAMAGWDEEALLIASLVVE
DTPDRLPKQKKRSDLLHFKTPPTNSRRKRRVQKRSPESIPVTVLDLDEEDDTAKQESEKK
EAESKSIENLDKKRAEASEEPRCSASSSDKNIESKSIQKAEKKGGAGLEEQGCSVSASSS
SAFPCIDRLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKKCPKCRQLISNG
RSCTVNTVLWNTIQLLFPKEIEARKAAGALNSREARRKSPVRSATANSNISSSRISRVFA
LNSPESGPSSQERRNSRSMRRQSVRASVIPNRNQEINSRRELPSQDEDAALALRMQREEF
MESFRTRSSADEQYRSSLALARANLRAMASRAINIRVRGGRGT

Transcript Sequence

Gene sequence data has not been registered.